Book Chapters (5): Microbiome Protocol eBook, 3 chapters published in Chineseby Bioprotocol; Anaerobic Biotechnology, 1 chapter published in English by Imperial College Press; Handbook of Biochips, 1 chapter published in English bySpringer (all chapters as the corresponding or first author)
1. Ju F, Fang, HHP, Zhang T*. Application of Metagenomics in Environmental Anaerobic Technology. Book chapter V of “Anaerobic Biotechnology: Environmental Protection and ResourceRecovery”, Imperial College Press, October, 2015. ISBN: 978-1-78326-790-3
2. Zhang HL, Zhou NJ, Ju F*. Immunoreaction-based Sensors to Improve Bacterial Detection. Book chapter of “Handbook of Biochips”，Springer，May 2020. ISBN: 978-1-4614-6623-9
3. Huang XY, Zhang L, Yuan L, Ju F*. (2021). Quantitative Metagenomics and MetatranscriptomicsMethods of Microbiome. Bio-101: e2003693. DOI: 10.21769/BioProtoc. 2003693
4. Zhang L, Ju F*. (2021). RNA-Stable Isotope Probing for Microbial Communities. Bio-101:e2003692. DOI: 10.21769/BioProtoc. 2003692
5. Zhao Z, Ju F*. (2020). Isolation and Extraction of IntracellularAbsorbed-extracellular and Free-extracellular Environmental DNA from AquaticMicrobial Community. Bio-101: e2003587. DOI: 10.21769/BioProtoc. 2003587
Journal Publications (60+): Journal name (no.of articles): Nature Communication (1), The ISME Journal (4), Advanced Science(1), Water Research (8), Environmental Science & Technology (11), Microbiome(1), Science of the Total Environment (4), Applied Microbiology and Biotechnology(6), Environmental Microbiology (2), Journal of Hazardous Materials (2), ScientificReports (2) and other journals
Googlecitation: 4250 times +, H-index: 28
1. Wang H, Wang YB, Zhang GQ, Zhao Z, Ju F*. 2022. Temporal Dynamics and Performance Association of the Tetrasphaera-Enriched Microbiome for Enhanced Biological Phosphorus Removal,Engineering(accepted) ( 基于自上而下的设计策略构建强化生物除磷微生物组并验证了其用于回收污水中磷资源的应用潜力)
2. Gao H, Zhao Z, Zhang L, Ju F*. 2022. Cyanopeptides restriction and degradation co-mediate microbiota assembly during a freshwater cyanobacterial harmful algal bloom (CyanoHAB). Water Research. 220: 118674 (发现蓝藻多肽抑制与降解共同调控蓝藻水华爆发期间微生物组群落构建)
3. Zhang L, Yin W, Wang C, Zhang AJ, Zhang H, Ju F*. 2021. Untangling Microbiota Diversity and Assembly Patterns in the World's Largest Water Diversion Canal. Water Research. 117617 (首次揭示世界上规模最大调水工程渠道中微生物组群落构建与时空动态机制)
4. Ju F, Wang Y, Zhang T*. 2018. Bioreactor microbial ecosystems with differentiated methanogenic phenolbiodegradation and competitive metabolic pathways unraveled with genome-resolved metagenomics. Biotechnology for Biofuels.11(1), 135 (苯酚降解产甲烷微生物组代谢途径与互作机制)
5. Ju F, Lau, F, Zhang T*. 2017. Linking microbial community, environmental variables and methanogenesis in anaerobic biogas digesters of chemically enhanced primary treatment sludge. Environmental Science & Technology. 51 (7), 3982-3992 (厌氧消化产甲烷微生物组群落构建机制与效能关联)
6. Ju F, Zhang T*. 2015. Experimental design and bioinformatics analysis for the application of metagenomics in environmental sciences and biotechnology. Environmental Science & Technology. 49(21), 12628-1264 (环境科学与生物技术领域宏基因组学主题综述)
7. Ju F , Zhang T*. 2015. 16S rRNA gene high-throughput sequencing data mining of microbial diversity and interactions. Applied Microbiology and Biotechnology. 99(10): 4119-4129 (微生物组群落多样性与互作关系研究的扩增子数据分析综述)
8. Ju F, Zhang T*. 2015. Bacterial assembly and temporal dynamics in activated sludge of a full-scale municipal wastewater treatment plant. The ISME Journal. 9: 683-695 (揭示了城市污水处理厂活性污泥工艺细菌群落构建与时间动态机制)
9. Ju F, Xia Y, Guo F, Wang ZP, Zhang T*. 2014. Taxonomic relatedness shapes bacterial assembly in activated sludge of globally distributed wastewater treatment plants. Environmental Microbiology.16(8):2421-2432 (揭示了全球活性污泥污水处理厂细菌群落构建机制与空间分布格局)
二、抗生素耐药组及病原细菌监测与风险阻控
10. Zhang Z, Zhang G, Ju F*. 2022. Using Culture-Enriched Phenotypic Metagenomics for Targeted High-Throughput Monitoring of Clinically-Important Fraction of theβ-Lactam Resistome. Environmental Science & Technology. 56(16):11429-11439 (提出表型宏基因组学概念与技术框架，并首次应用于临床超广谱β-内酰胺抗生素耐药组的环境检测)
11. Yuan L, Wang Y, Zhang L, Alejandro P, Zhou J, Smets B, Bürgmann H, Ju F*. 2021. Pathogenic and indigenous denitrifying bacteria are transcriptionally active and key multi-antibiotic resistant players in wastewater treatment plants. Environmental Science & Technology. 55(15): 10862-10874 (提出基因组水平的定量宏转录组学方法，发现反硝化细菌与病原细菌是城市污水处理厂多重耐药性活跃表达者)
12. Shuai M#, Zhang G#, Ju F*, Zheng J* et al. 2022. Human gut antibiotic resistome and progression of diabetes. Advanced Science. e2104965 (equal contribution) (发现肠道抗生素抗性组与糖尿病发展的关联)
13. Ju F, Beck K, Yin X, McArdell Christa, Singer H, Johnson D, Zhang T, Buergmann H*. 2019. Wastewater treatment plant resistomes are shaped by bacterial composition, genetic exchange and up-regulated expression in the effluent. The ISME Journal.13 (2), 346:1 (提出了定量转录组学方法与技术框架，并首次用于探明城市污水处理厂抗性组的表达活性与关键驱动因素)
14. Ju F, Li B, Ma LP, Wang YB, Huang DP, Zhang T*. 2016. Antibiotic resistance genes and human bacterial pathogens: co-occurrence, removal, and enrichment in municipal sewage sludge digesters. Water Research. 91, 1-10 (揭示了厌氧消化过程对市政污泥人类病原细菌与抗生素抗性基因影响)
15. Li B#,·Ju F#,·Cai L,·Zhang T*. 2015. Profile and fate of bacterial pathogens in sewage treatment plants revealed by high-throughput metagenomic approach. Environmental Science & Technology.49 (17), 10492–10502 (equal contribution) (揭示了城市污水处理厂人类病原细菌的多样性与归趋)
三、新污染物降解转化和健康效应
16. Zhang Z, Peng H, Yang D, Zhang G, Zhang J, Ju F*. 2022. Polyvinyl chloride degradation by a bacterium isolated from the gut of insect larvae. Nature Communication. 13: 5360 (聚氯乙烯细菌降解机制解析新突破与首个解聚活性酶发现)
17. Yang XY#; Zhang L#, Chen Y*, Ju F* et al. 2022. Micro(nano)plastic Size and Concentration Co-Differentiate Nitrogen Transformation, Microbiota Dynamics, and Assembly Patterns in Constructed Wetlands. Water Research. 220: 118636 (equal contribution) (揭示了微纳塑料对人工湿地微生物组脱氮与群落构建机制影响)
18. He Y, Zhang Y, Ju F*. 2022. Metformin Contamination in Global Waters: Biotic and Abiotic Transformation, Byproduct Generation and Toxicity, and Evaluation as a Pharmaceutical Indicator. Environmental Science & Technology. 56, 19, 13528-13545 (综述评估了全球水环境二甲双胍污染物归趋、产物毒理与指示作用)
19. He Y , Jin H, Gao H, Zhang GQ, Ju F*. 2021. Prevalence, production, and ecotoxicity of chlorination-derived metformin byproducts in Chinese urban water systems. Science of the Total Environment. 151665 (首次揭示了二甲双胍氯化产物生态毒性及中国城镇水环境分布)
20. Zhang RS#, He YZ#, Yao LX#, Chen J, Zhu SH, Rao XX, Tang PY, You J, Hua GQ, Zhang L, Ju F*, Wu LF*. 2021. Metformin chlorination byproducts in drinking water exhibit marked toxicities of a potential health concern. Environment International. (146)106244 (发现了二甲双胍氯化副产物的显著毒性与潜在健康风险)
四、宏基因组学与微生物组数据分析
21. Huang X, Zhang L, Yuan L, Ju F*. 2021.Quantitative Metagenomics and Metatranscriptomics Methods of Microbiome 微生物组的定量宏基因组学和定量宏转录组学方法. Bio-101: e2003693. DOI: 10.21769/BioProtoc.2003693 (in Chinese)(提出定量宏组学方法与技术参数)
22. Zhang L, Ju F*. 2021. RNA-Stable IsotopeProbing for Microbial Communities (RNA-SIP). Bio-101: e2003692. DOI: 10.21769/BioProtoc.2003692 (in Chinese) (微生物群落RNA稳定同位素探针技术）
23. Zhao Z, Ju F*. 2020. Isolation and Extractionof Intracellular Absorbed-extracellular and Free-extracellular EnvironmentalDNA from Aquatic Microbial Community. Bio-101: e2003587. DOI: 10.21769/BioProtoc. 2003587 (in Chinese) (微生物群落胞内/胞外吸附/胞外游离水环境DNA的分离提取技术)
24. Ju F, Zhang T*. 2015. Experimental design and bioinformatics analysis for the application ofmetagenomics in environmental sciences and biotechnology. Environmental Science &Technology.49(21): 12628-12640 (环境科学与生物技术领域宏基因组学主题综述)
25. Ju F, Zhang T*. 2015. 16S rRNA genehigh-throughput sequencing data mining of microbial diversity and interactions. Applied Microbiology and Biotechnology. 99(10):4119-4129 (微生物多样性与互作研究的扩增子数据分析综述)