Book chapter

1.    HLZhang, NJ, Zhou, Ju F*. Immunoreaction-Based Sensors to Improve BacterialDetection. Book chapter of “Handbook of Biochips”SpringerMay 2020. ISBN: 978-1-4614-6623-9.

2.    JuF, Fang, HHP, Zhang T*. Application of Metagenomics in Environmental AnaerobicTechnology. Book chapter V of “Anaerobic Biotechnology: EnvironmentalProtection and Resource Recovery”, Imperial College Press, October, 2015.ISBN: 978-1-78326-790-3

Journal Papers

1.    ZhuG, Wang X, Yang T, Su J, Qin Y, Wang S, Gillings M, Wang C, Ju F, et al. 2020. Airpollution could drive global dissemination of antibiotic resistance genes. TheISME Journal, 1-12

2.    CaoY, Yu X, Ju F, Zhan H, Jiang B, Kang H, Xie Z.2020. Airborne BacterialCommunity Diversity, Source and Function along the Antarctic Coast. Science ofThe Total Environment, 142700

3.    WangCX, Wang YB, Wang YL, Cheung KK, Ju F, Xia Y, Zhang T. 2020. Genome-centricmicrobiome analysis reveals solid retention time (SRT)-shaped speciesinteractions and niche differentiation in food waste and sludge co-digesters.Water Research. (181) 115858

4.    NiY, Yu G, Chen H, Deng YQ, Wells PM, Steves CJ, Ju F, Fu JF, 2020. M2IA: a WebServer for Microbiome and Metabolome Integrative Analysis. Bioinformatics. btaa188.

5.    HuWC, Liang JS, Ju F, Wang QJ, Liu RP, Bai YH*, Liu HJ, Qu JH, 2020. Metagenomicsunravels differential microbiome composition and metabolic potential in rapid sandfilters purifying surface water versus groundwater. Environmental Science &Technology. 2020, 54, 8, 5197-5206.

6.    JuF, Zhang T. 2019. Advances in meta-omics research on activated sludge microbialcommunity. Microbiology China, 46(8): 2038-2052 (in Chinese).

7.    JuF, Beck K, Yin X, McArdell Christa, Singer H, Johnson D, Zhang T, Buergmann H*. 2019. Wastewater treatment plant resistomes are shaped by bacterialcomposition, genetic exchange and upregulated expression in the effluent. TheISME Journal 13 (2), 346-360.

8.    ZhaoF#, Ju F #, Huang K, Mao Y, Zhang XX*., Ren H, Zhang T*. 2019. Comprehensiveinsights into the key components of bacterial assemblages in pharmaceuticalwastewater treatment plants. Science of The Total Environment 651, 2148-2157.10492–10502 #equal contribution.

9.    GuoF, Zhang T, Li B, Wang Z, Ju F, Liang Y, 2019. Mycobacterial species and theircontribution to cholesterol degradation in wastewater treatment plants.Scientific reports 9 (1), 836.

10.   Ju F, Wang Y, Zhang T. 2018. Bioreactormicrobial ecosystems with differentiated methanogenic phenol biodegradation andcompetitive metabolic pathways unraveled with genome-resolved metagenomics.Biotechnology for Biofuels 11 (1), 135.

11.   Jiang XT, Ye L, Ju F, Wang YL, Zhang T*.2018. Toward an intensive longitudinal understanding of activated sludgebacterial assembly and dynamics. Environmental Science & Technology. 52(15), 8224-8232.

12.   Jiang XT, Ye L, Ju F, Li B, Ma LP, ZhangT*. 2018. Temporal dynamics of activated sludge bacterial communities in twodiversity variant full-scale sewage treatment plants. Applied microbiology andbiotechnology, 1-10.

13.   Huang K, Mao Y, Zhao F, Zhang XX, Ju F,Ye L, Wang Y, Li B, Ren H, Zhang T. 2018. Free-living bacteria and potentialbacterial pathogens in sewage treatment plants. Applied microbiology andbiotechnology102 (5), 2455-2464.

14.   Ju F, Lau, F, Zhang T*. 2017. Linkingmicrobial community, environmental variables and methanogenesis in anaerobicbiogas digesters of chemically enhanced primary treatment sludge. EnvironmentalScience & Technology. 51 (7), 3982-3992.

15.   Hu A, Ju F, Hou L, Li J, Yang X, Wang H,Mulla SI, Sun Q, Bürgmann H*, Yu CP*. 2017. Strong impact of anthropogeniccontamination on the cooccurrence patterns of a riverinemicrobial community. Environmental Microbiology 19(12):4993-5009.

16.   Ju F, Li B, Ma LP, Wang YB, Huang DP,Zhang T*. 2016. Antibiotic resistance genes and human bacterial pathogens:co-occurrence, removal, and enrichment in municipal sewage sludge digesters.Water Research. 91, 1-10.   

17.   Ju F, Wang YB, Lau FTK, Fung WC, HuangDP, Xia Y, Zhang T*. 2016. Anaerobic digestion of chemically enhanced primarytreatment (CEPT) sludge and the microbial community structure. AppliedMicrobiology and Biotechnology. 100 (20), 8975-8982.

18.   Li B#,· Ju F# ,·Cai L ,·Zhang T*. 2015.Profile and fate of bacterial pathogens in sewage treatment plants revealed byhigh-throughput metagenomic approach. Environmental Science & Technology.49 (17), 10492–10502 #equal contribution

19.   Li B, Yang Y, Ma LP, Ju F, Guo F, TiedjeJ. Zhang T*. 2015. Metagenomic and network analysis reveal wide distributionand co-occurrence of environmental antibiotic resistance genes. The ISMEJournal. 9(11):2490-2502.

20.   Ju F, Zhang T*. 2015. Experimentaldesign and bioinformatics analysis for the application of metagenomics inenvironmental sciences and biotechnology. Environmental Science &Technology. 49(21), 12628-12640.

21.   Ju F, Zhang T*. 2015. 16s rRNA genehigh-throughput sequencing data mining of microbial diversity and interactions.Applied Microbiology and Biotechnology 99(10):4119-4129.

22.   Ju F, Zhang T*. 2015. Bacterial assemblyand temporal dynamics in activated sludge of a full-scale municipal wastewatertreatment plant. The ISME Journal. 9: 683-695.

23.   Wang YB, Xia Y, Ju F, Zhang T*. 2015.Metagenome approaches revealed a biological prospect for improvement onmesophilic cellulose degradation. Applied Microbiology and Biotechnology.99(24):10871-10879.

24.   Chao YQ, Ma LP, Yang Y, Ju F, Zhang XX,Wu, WM, Zhang T*. 2014. Metagenomic analysis reveals significant changes ofmicrobial compositions and protective functions during drinking watertreatment. Scientific Reports. srep03550.

25.   Ju F, Xia Y, Guo F, Wang ZP, Zhang T*.2014. Taxonomic relatedness shapes bacterial assembly in activated sludge ofglobally distributed wastewater treatment plants. Environmental Microbiology.16(8):2421-2432.

26.   Ju F, Guo F, Ye L, Xia Y, Zhang T*.2014. Metagenomic analysis on seasonal microbial variations of activated sludgefrom a full-scale wastewater treatment plant over four years. EnvironmentalMicrobiology Reports. 6(1): 80-89.

27.   Peng XX, Guo F, Ju F, Zhang T*. 2014.Shifts in the microbial community, nitrifiers and denitrifiers in the biofilmin a full-scale rotating biological contactor. Environmental Science &Technology. 48 (14): 8044-8052.

28.   Cai L, Ju F, Zhang T*. 2014. Trackinghuman sewage microbiome in a municipal wastewater treatment plant. AppliedMicrobiology and Biotechnology. 98(7): 3317-3326.

29.   Liu LL, Wang ZP, Ju F, Zhang T*. 2014.Co-occurrence correlations of heavy metals in sediments revealed using networkanalysis. Chemosphere. 119:1305-1313.

30.   Ju F, Zhang T*. 2014. Novel microbialpopulations in ambient and mesophilic biogas-producing and phenol-degradingconsortia unraveled by high-throughput sequencing. Microbial Ecology.68(2)235-246.

31.   Fang H, Cai L, Yang Y, Ju F, Li XD, YuYL, Zhang T*. 2014. Metagenomic analysis reveals potential biodegradationpathways of persistent pesticides in freshwater and marine sediments. Scienceof the Total Environment. 470-471: 983-992.

32.   Xia Y,   Ju F, Fang H.H.,Zhang, T*. 2013. Mining of novel thermo-stable cellulolytic genes from athermophilic cellulose-degrading consortium by metagenomics. PLoS ONE, 8(1),e53779.

33.   Guo F,   Ju F, Cai L, ZhangT*. 2013. Taxonomic precision of different hypervariable regions of 16S rRNAgene and annotation methods for functional bacterial groups in biologicalwastewater treatment. PLoS ONE. 8(10): e7618.

34.   Yang Y, Li B, Ju F, Zhang T*. 2013.Exploring variation of antibiotic resistance genes in activated sludge over afour-year period through a metagenomic approach. Environmental Science &Technology. 18(47),10197-10205.

35.   Lan S *, Ju F, Wu X. 2012. Treatment ofwastewater containing EDTA-Cu (II) using the combined process of interiormicroelectrolysis and Fenton oxidation-coagulation. Separation and PurificationTechnology, 89: 117-124.

36.   Ju F, Hu YY*, Cheng, JH. 2011. Removalof chelated Cu (II) from aqueous solution by adsorption–coprecipitation withiron hydroxides prepared from microelectrolysis process. Desalination, 274(1),130-135.

37.   Ju F, Hu YY*. 2011. Removal of EDTA-chelatedcopper from aqueous solution by interior microelectrolysis. Separation andPurification Technology, 78(1), 33-41.